Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3658104_3658382_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3658104 - 3658382

Intron Length:

279

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGATGC

5'SS Class:

major

3'SS Sequence:

CTTCTCTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTTCTCTCATTC

Flanking Amino Acid:

KIDEKDSEKRTALHLAAEKN

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

57.8

42.7

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

85.4

0.8

0.7

Minor 5ss

36.5

-1.5

3.3

41.5

45.3

Minor BPS

51.6

0.03

1.8

67.67

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020986

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032889

3655192 - 3664344

9153

ENSAPLT00000032603

3655192 - 3661766

6575