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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3661088_3661644_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3661088 - 3661644
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAATA
Flanking Amino Acid:
SKGLEPAQSKEASLAKMATK
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.7
0.67
0.9
77.3
36.8
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
76.1
0.82
1.3
84.11
29.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020986
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032889
3655192 - 3664344
9153