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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3661767_3664103_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3661767 - 3664103
Intron Length:
2337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
ATGACTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
GTTACTTTAAGC
Flanking Amino Acid:
RKPQEMSAPAEPALSSNPPQ
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.8
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
75.5
0.57
1
66
44.6
Minor 5ss
38.4
-1.3
3
45.7
43.4
Minor BPS
63.6
0.41
1.7
71.72
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020986
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032889
3655192 - 3664344
9153