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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_368958_369243_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
368958 - 369243
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTACTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CCTTCCCTACTT
Flanking Amino Acid:
VRGKWLEQSTDNYLILPSGN
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
70.5
0.46
0.9
68.8
37
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
52.3
0.15
2
71.93
45.5

Associated Gene:

Gene:
CDON
Ensembl Gene ID:
ENSAPLG00000014642
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018082
338790 - 373993
35204
ENSAPLT00000015293
338790 - 373993
35204
ENSAPLT00000029285
338790 - 373993
35204