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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3694468_3706219_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3694468 - 3706219
Intron Length:
11752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
GTCACCTGCATC
Flanking Amino Acid:
MHWQKSSAPEQQPQP
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
46.7
-0.2
1.9
56.65
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014435
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015042
3694452 - 3718155
23704