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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3707141_3708175_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3707141 - 3708175
Intron Length:
1035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
CCCACTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TCTCGTTTAATT
Flanking Amino Acid:
TSQPLITNFAPRSATPAVVP
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
65.7
40.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
63.8
0.31
0.9
57.7
31.8
Minor 5ss
36.7
-1.5
2.9
48.4
41.1
Minor BPS
61
0.42
1.8
76.64
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014435
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015042
3694452 - 3718155
23704