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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3711562_3712164_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3711562 - 3712164
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAC
5'SS Class:
major
3'SS Sequence:
GTGCTATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TAGACTCTCACA
Flanking Amino Acid:
RLDAKEHRGKTPLLVAVTAR
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
63.9
42.4
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
77.3
0.61
0.9
73.7
40.8
Minor 5ss
36.6
-1.5
3.3
50.1
46.5
Minor BPS
45.5
-0.3
2
57.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014435
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015042
3694452 - 3718155
23704