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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_371544_373856_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
371544 - 373856
Intron Length:
2313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCATGAACT
Flanking Amino Acid:
VTVLISTTSSGLIPHFTSEP
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
69
0.67
1.7
87.65
36.8

Associated Gene:

Gene:
CDON
Ensembl Gene ID:
ENSAPLG00000014642
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029285
338790 - 373993
35204
ENSAPLT00000018082
338790 - 373993
35204
ENSAPLT00000015293
338790 - 373993
35204