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Intron Name: Anas_platyrhynchos_platyrhynchos_25_3723996_3724374_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3723996 - 3724374

Intron Length:

379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCACG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTCTTTCCCC

Flanking Amino Acid:

PVPLCFNQGLAAGPPSLADL

Intron Amino Acid Position:

130

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

42.9

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

0.68

0.7

73.6

24.6

Minor 5ss

39.8

-1.1

2.8

47.1

42.4

Minor BPS

46.5

-0.2

3.6

77.59

Associated Gene:

Gene:

COLCA2

Ensembl Gene ID:

ENSAPLG00000014426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015021

3723663 - 3729206

5544