Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3725826_3727575_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3725826 - 3727575

Intron Length:

1750

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

TCTCTTTGGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTACAA

U12 Branch Point Sequence:

GCATCTACAAAC

Flanking Amino Acid:

RARQAASSATVSWGSSSIQF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

71.7

33.7

Major BPS

0.27

1.1

69.2

36.3

Major PPT

72.8

0.51

1.1

68.5

42.1

Minor 5ss

34.2

-1.8

3.2

45.6

43.6

Minor BPS

44.2

-0.4

1.8

50.75

39.4

Associated Gene:

Gene:

COLCA2

Ensembl Gene ID:

ENSAPLG00000014426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015021

3723663 - 3729206

5544