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Intron Name: Anas_platyrhynchos_platyrhynchos_25_3727671_3729199_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3727671 - 3729199

Intron Length:

1529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

TGAATTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTTCCATGAATT

Flanking Amino Acid:

MSGKPKVYQGVR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

67.3

36.7

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

75.6

0.58

66.1

44.9

Minor 5ss

32.2

-2

3.4

43.3

Minor BPS

63.3

0.5

1.7

84.15

35.9

Associated Gene:

Gene:

COLCA2

Ensembl Gene ID:

ENSAPLG00000014426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015021

3723663 - 3729206

5544