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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3732398_3733035_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3732398 - 3733035
Intron Length:
638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGCTTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
TGCTTCTCCACA
Flanking Amino Acid:
FPSDTAHFLLREPWEQTSAD
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.8
33.2
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
77.9
0.63
0.8
72.3
32.5
Minor 5ss
30.4
-2.2
3.1
37.6
34.7
Minor BPS
49.3
-0
2
63.67
42.8

Associated Gene:

Gene:
C11orf53
Ensembl Gene ID:
ENSAPLG00000014422
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015019
3731996 - 3734042
2047