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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3743482_3743575_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3743482 - 3743575
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTACAT
U12 Branch Point Sequence:
TTTTTGTGGGTT
Flanking Amino Acid:
GERRDELDPLEEYTCLWQEC
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
85.7
0.8
0.9
80.6
37
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
36.1
-1
3.7
70.54
41.3

Associated Gene:

Gene:
HINFP
Ensembl Gene ID:
ENSAPLG00000014291
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014902
3743331 - 3747319
3989