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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3744400_3744723_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3744400 - 3744723
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGCAGC
5'SS Class:
weak_major
3'SS Sequence:
CCCGGCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCCGTTTCCT
Flanking Amino Acid:
DHIRRQTALDQQRFQCSHCS
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.3
54.4
44.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
61.9
0.27
1
53.1
36.7
Minor 5ss
36.1
-1.6
2.9
47.6
41.5
Minor BPS
37
-0.9
3.8
69.35
47.2

Associated Gene:

Gene:
HINFP
Ensembl Gene ID:
ENSAPLG00000014291
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014902
3743331 - 3747319
3989