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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3744802_3744899_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3744802 - 3744899
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTTCCCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GTTTCCTGACAT
Flanking Amino Acid:
RLLRDHMRNHVNHYKCPLCD
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.3
42.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
82.9
0.74
0.7
77.9
23.9
Minor 5ss
33.8
-1.8
2.9
40.4
45.5
Minor BPS
58.2
0.33
1.9
79.39
42

Associated Gene:

Gene:
HINFP
Ensembl Gene ID:
ENSAPLG00000014291
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014902
3743331 - 3747319
3989