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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3751394_3757679_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3751394 - 3757679
Intron Length:
6286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGATCCCAAACT
Flanking Amino Acid:
VREGSWWRKRGYKTLLKCLS
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
74.7
0.56
0.7
65.8
30.2
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
57.3
0.31
2
78.76
42.8

Associated Gene:

Gene:
ABCG4
Ensembl Gene ID:
ENSAPLG00000024795
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047365
3750187 - 3761715
11529
ENSAPLT00000026187
3750187 - 3761715
11529