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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3767943_3768624_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3767943 - 3768624
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TGCCCTGCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGTAT
U12 Branch Point Sequence:
TTGCCCTGCACC
Flanking Amino Acid:
FPVLLRCKVLHLQLNSLGPD
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
46.5
-0.2
1.5
45.3
47.5
Major PPT
62.8
0.29
1
54.8
40.2
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
53.8
0.1
2
68.89
42.3

Associated Gene:

Gene:
NLRX1
Ensembl Gene ID:
ENSAPLG00000014072
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045938
3764808 - 3769506
4699
ENSAPLT00000014660
3764808 - 3769506
4699