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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3771864_3771993_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3771864 - 3771993
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCGCTGCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
TCTTCTTTCCCC
Flanking Amino Acid:
KEDDYGAGAIGQFLWEVDAG
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
58
0.18
1
52.8
36.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
43.9
-0.4
3.6
69.26
43

Associated Gene:

Gene:
PDZD3
Ensembl Gene ID:
ENSAPLG00000016510
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035533
3768076 - 3773735
5660