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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3824203_3824673_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3824203 - 3824673
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GTGTTTATATCT
Flanking Amino Acid:
SANAIYSLAARPLPVPKLPP
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
37.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
78.9
0.65
0.8
69.6
36.8
Minor 5ss
40.8
-1
3.1
58.8
45.7
Minor BPS
48.8
-0
1.8
68.83
42.3

Associated Gene:

Gene:
CBL
Ensembl Gene ID:
ENSAPLG00000013545
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014166
3819403 - 3848923
29521