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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3826050_3826545_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3826050 - 3826545
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTGTTAAGC
Flanking Amino Acid:
GASSPGTSSKAAPGTLHKDK
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.5
0.69
0.8
72.6
37.6
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
58.5
0.25
2.3
77.35
39.1

Associated Gene:

Gene:
CBL
Ensembl Gene ID:
ENSAPLG00000013545
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014166
3819403 - 3848923
29521