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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3826678_3828048_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3826678 - 3828048
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CATCCGTTGATT
Flanking Amino Acid:
FMMKELAGTKVERPPSPFSV
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.1
33
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
30.2
-2.3
3.5
37.5
41.7
Minor BPS
49.9
0.08
2.1
69.17
42.1

Associated Gene:

Gene:
CBL
Ensembl Gene ID:
ENSAPLG00000013545
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014166
3819403 - 3848923
29521