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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3830602_3832092_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3830602 - 3832092
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
GTTCTCTCTACA
Flanking Amino Acid:
EFDIFTRLFQPWSSLLRNWN
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
66.1
0.4
1
73
31.5
Major PPT
83
0.74
0.8
76.7
32.1
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
49.7
-0
1.9
65.87
39.8

Associated Gene:

Gene:
CBL
Ensembl Gene ID:
ENSAPLG00000013545
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014166
3819403 - 3848923
29521