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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3833294_3848675_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3833294 - 3848675
Intron Length:
15382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGATCCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTAAAAA
Flanking Amino Acid:
ERMYEENSQPRRNLTKLSLI
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.6
0.67
0.9
73.4
36.8
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
59.9
0.31
1.8
71.75
40.6

Associated Gene:

Gene:
CBL
Ensembl Gene ID:
ENSAPLG00000013545
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014166
3819403 - 3848923
29521