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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3857013_3857755_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3857013 - 3857755
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGCCCCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
GTCTGCGGAGCT
Flanking Amino Acid:
PQPGPAAAQERPPMADKMKL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
73.2
0.52
0.8
65.8
30.2
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
40
-0.6
2.5
61.32
48

Associated Gene:

Gene:
C1QTNF5
Ensembl Gene ID:
ENSAPLG00000030270
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029298
3855858 - 3858740
2883