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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3872535_3873657_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3872535 - 3873657
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAT
U12 Branch Point Sequence:
GCTCATGGCACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
38
Major BPS
62
0.3
1.3
65.3
43.7
Major PPT
78.7
0.65
0.8
69.7
36.7
Minor 5ss
27.1
-2.6
3
31.8
42.6
Minor BPS
32.4
-1.5
2.2
34.98
39.6

Associated Gene:

Gene:
USP2
Ensembl Gene ID:
ENSAPLG00000030018
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021710
3863937 - 3873750
9814