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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3877545_3877647_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3877545 - 3877647
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CCCCTTGTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTCCCCACCC
Flanking Amino Acid:
PTVGIAVILTVLQAAQCQMI
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
71.7
0.49
0.9
63.4
36.9
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
42.9
-0.5
2.1
50.74
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020498
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036427
3875083 - 3877846
2764