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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_39037_41270_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39037 - 41270
Intron Length:
2234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TAATTTCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
GTGCACCTAATT
Flanking Amino Acid:
DGNEVYGPDKIHQPQDKEAN
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
68.3
0.41
0.9
67.3
38.9
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
49.2
0.02
1.9
68.38
42

Associated Gene:

Gene:
ANKMY1
Ensembl Gene ID:
ENSAPLG00000013399
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013963
6941 - 53344
46404