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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3964053_3974604_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3964053 - 3974604
Intron Length:
10552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
TGACAAATCACC
Flanking Amino Acid:
SEPSPYTDKLDFGKCHSEVP
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
81.8
0.71
0.8
72.8
37.5
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
38
-0.9
2.2
49.46
39.4

Associated Gene:

Gene:
NECTIN1
Ensembl Gene ID:
ENSAPLG00000001931
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002151
3963834 - 4004707
40874