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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3976579_3993073_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
3976579 - 3993073
Intron Length:
16495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTGTA
5'SS Class:
major
3'SS Sequence:
CTGTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGTGCTTCGCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
74.3
36.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
75.1
0.56
1
68.6
42
Minor 5ss
35.3
-1.7
3.5
45.8
44.7
Minor BPS
38.1
-0.8
3.7
67.12
49.4

Associated Gene:

Gene:
NECTIN1
Ensembl Gene ID:
ENSAPLG00000001931
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001962
3976578 - 4004707
28130