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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4003231_4003565_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4003231 - 4003565
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
CTGCCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
CTTTCCTTTTTT
Flanking Amino Acid:
FTDSMTLNVQYEPEVTIEGF
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.3
40.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
73.1
0.52
0.8
65.9
30.1
Minor 5ss
34
-1.8
3.2
40.9
45.3
Minor BPS
45.8
-0.2
3.6
79.54
43

Associated Gene:

Gene:
NECTIN1
Ensembl Gene ID:
ENSAPLG00000001931
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002151
3963834 - 4004707
40874
ENSAPLT00000001962
3976578 - 4004707
28130
ENSAPLT00000038430
3991510 - 4004880
13371