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Intron Name: Anas_platyrhynchos_platyrhynchos_25_4003869_4004529_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4003869 - 4004529

Intron Length:

661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

GCACTTCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCGCAC

U12 Branch Point Sequence:

TTCTTCGCACTT

Flanking Amino Acid:

REGQLNLTVLAKPTNRMEGT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

40.1

Major BPS

60.1

0.25

1.4

71.3

36.7

Major PPT

75.7

0.58

0.9

36.8

Minor 5ss

31.8

-2.1

3.1

34.5

41.3

Minor BPS

43.9

-0.3

2.3

66.82

44.9

Associated Gene:

Gene:

NECTIN1

Ensembl Gene ID:

ENSAPLG00000001931

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001962

3976578 - 4004707

28130

ENSAPLT00000038430

3991510 - 4004880

13371

ENSAPLT00000002151

3963834 - 4004707

40874