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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_412006_412068_R

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
412006 - 412068
Intron Length:
63

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTTTCTTTC
5'SS Class:
minor
3'SS Sequence:
ACCCGTACTTCAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATACCCGTACTT
Flanking Amino Acid:
EERKQEKTLVSVTAQIIGDP
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
47.7
-0.1
1.3
52.6
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.4
0.39
0.9
62.5
37.9
Minor 5ss
68.6
0.63
1.7
77.1
31.2
Minor BPS
47.3
-0.1
2.2
68.59
42.4

Associated Gene:

Gene:
EI24
Ensembl Gene ID:
ENSAPLG00000015775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016476
406133 - 417605
11473