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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_412079_414703_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
412079 - 414703
Intron Length:
2625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AAGGCTCACCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATGAAA
U12 Branch Point Sequence:
AGCACAAGAATG
Flanking Amino Acid:
RFHMEERKQEKTLVSVTAQI
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
49.5
-0
1.3
59.7
34.6
Major PPT
47.3
-0.1
1.1
38.8
38.6
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
38.9
-0.9
1.8
38.89
37.4

Associated Gene:

Gene:
EI24
Ensembl Gene ID:
ENSAPLG00000015775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016476
406133 - 417605
11473