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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_41412_41938_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41412 - 41938
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTTACTG
5'SS Class:
weak_major
3'SS Sequence:
TTTGTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TATGCTTTACAT
Flanking Amino Acid:
ARTDVRLPSKLGGLTPLHIA
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.22
1.2
53
43.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
38.1
-1.3
3
48.8
46.8
Minor BPS
54.9
0.23
1.8
73.99
42.9

Associated Gene:

Gene:
ANKMY1
Ensembl Gene ID:
ENSAPLG00000013399
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013963
6941 - 53344
46404