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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4144762_4150874_R

Intron Information:

Intron Rank:
136904
Intron Class:
major
Intron Phase:
Intron Coordinates:
4144762 - 4150874
Intron Length:
6113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TAACCATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.7
0.56
0.8
67.3
38.7
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
56.4
0.28
1.6
71.82
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021157
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031917
4142168 - 4151355
9188