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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4203068_4206072_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4203068 - 4206072
Intron Length:
3005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
ATGCCCCAAATT
Flanking Amino Acid:
TWKSSKQSVLSHYRPFYVNK
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
83.3
0.75
0.8
77.7
29.4
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
48.4
-0
2
68.55
42.4

Associated Gene:

Gene:
TRIM29
Ensembl Gene ID:
ENSAPLG00000000965
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023893
4203005 - 4225771
22767
ENSAPLT00000000957
4203005 - 4225771
22767