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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4207346_4208515_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4207346 - 4208515
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGGGTA
5'SS Class:
major
3'SS Sequence:
TTCTATCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
AATAACAAAACC
Flanking Amino Acid:
SSFQATEETLVGNGTKLPFQ
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
66
39.7
Major BPS
53
0.08
1
61.4
34.3
Major PPT
85.3
0.79
0.8
77.1
36.8
Minor 5ss
31.9
-2.1
3.8
43
46.5
Minor BPS
44.4
-0.4
2
57.32
40.3

Associated Gene:

Gene:
TRIM29
Ensembl Gene ID:
ENSAPLG00000000965
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000957
4203005 - 4225771
22767