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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4207346_4211605_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4207346 - 4211605
Intron Length:
4260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
AATAACAAAACC
Flanking Amino Acid:
KRFSMFLSPKVGNGTKLPFQ
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
53
0.08
1
61.4
34.3
Major PPT
85.3
0.79
0.8
77.1
36.8
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
44.4
-0.4
2
57.32
40.3

Associated Gene:

Gene:
TRIM29
Ensembl Gene ID:
ENSAPLG00000000965
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023893
4203005 - 4225771
22767