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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_42111_43549_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42111 - 43549
Intron Length:
1439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATGTCAATT
Flanking Amino Acid:
TVVGAEGIILKQQKRWETIQ
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
69.9
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
66.5
0.37
1
56.8
42.9
Minor 5ss
36.3
-1.6
2.9
45
36.8
Minor BPS
46.6
-0.1
2.2
68.04
43.4

Associated Gene:

Gene:
ANKMY1
Ensembl Gene ID:
ENSAPLG00000013399
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013963
6941 - 53344
46404