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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_422080_422399_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
422080 - 422399
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATGAAT
5'SS Class:
major
3'SS Sequence:
TGCTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
CAGATATGAAAT
Flanking Amino Acid:
DFKDDFLRLLREAEESSKVR
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
71.8
39.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
71.9
0.49
0.9
65.5
36.1
Minor 5ss
34.5
-1.8
3.3
49.5
46.5
Minor BPS
42.6
-0.4
1.7
53.17
41.2

Associated Gene:

Gene:
SRPRA
Ensembl Gene ID:
ENSAPLG00000016079
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016787
418244 - 427730
9487