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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_422561_423456_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
422561 - 423456
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCGA
5'SS Class:
major
3'SS Sequence:
CTCTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
CAAGGCTGAGCT
Flanking Amino Acid:
TKKNKGSKKEGVETVTASNK
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
65
42.7
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
79.2
0.66
0.8
73
31.9
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
41.7
-0.5
2.1
54.79
46.4

Associated Gene:

Gene:
SRPRA
Ensembl Gene ID:
ENSAPLG00000016079
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016787
418244 - 427730
9487