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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4258878_4265232_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4258878 - 4265232
Intron Length:
6355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACCG
5'SS Class:
major
3'SS Sequence:
CTCCCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
SWQEEAQPHEEVKIFRALIL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
60
44.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.2
0.48
0.9
64.7
36.5
Minor 5ss
30.9
-2.2
3.3
39.5
45.9
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
OAF
Ensembl Gene ID:
ENSAPLG00000000725
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000726
4257621 - 4266806
9186