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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_426495_426621_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
426495 - 426621
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TCTTGGGTATGT
Flanking Amino Acid:
LVGNEAVDQLVKFNKALADH
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
59.7
0.24
1
67
29.8
Major PPT
85.2
0.79
0.7
84.4
23.5
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
33.9
-1.1
2.9
58.49
50.5

Associated Gene:

Gene:
SRPRA
Ensembl Gene ID:
ENSAPLG00000016079
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016787
418244 - 427730
9487