Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4272098_4275913_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4272098 - 4275913

Intron Length:

3816

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGGGC

5'SS Class:

major

3'SS Sequence:

CCTTTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTGAC

U12 Branch Point Sequence:

CTATTCCCACCC

Flanking Amino Acid:

RMVNLESVHAAVPEGERGPG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

66.2

39.3

Major BPS

62.5

0.31

1.1

54.8

42.1

Major PPT

89.8

0.89

0.6

Minor 5ss

28.9

-2.4

3.6

41.1

45.6

Minor BPS

43.5

-0.5

55.63

42.6

Associated Gene:

Gene:

POU2F3

Ensembl Gene ID:

ENSAPLG00000015548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022371

4271812 - 4311324

39513