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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4275968_4276685_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4275968 - 4276685
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGAC
5'SS Class:
major
3'SS Sequence:
CCATCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTATTAAAAT
Flanking Amino Acid:
PGCGGSHHFKEIKMSGDAAD
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.1
36.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.6
0.69
0.8
72.3
37.5
Minor 5ss
31.9
-2.1
3.2
34.6
41.9
Minor BPS
52.2
0.15
1.9
74.96
41.5

Associated Gene:

Gene:
POU2F3
Ensembl Gene ID:
ENSAPLG00000015548
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022371
4271812 - 4311324
39513