Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4326576_4327130_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4326576 - 4327130

Intron Length:

555

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGCTGG

5'SS Class:

major

3'SS Sequence:

CCCTTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGGTAT

U12 Branch Point Sequence:

TATCCTTCCAGC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

56.7

Major BPS

46.5

-0.2

1.6

43.1

49.2

Major PPT

87.4

0.84

0.7

25.5

Minor 5ss

37.4

-1.4

38.2

46.7

Minor BPS

43.8

-0.5

2.1

57.04

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015538

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024156

4326517 - 4329500

2984