Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_433219_433876_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

433219 - 433876

Intron Length:

658

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCTTCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

CTGATCTTAATC

Flanking Amino Acid:

AHDLIQKLSPRTSNVRSTFF

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

72.6

38.9

Major BPS

0.92

0.9

86.2

29.1

Major PPT

78.6

0.64

0.8

32.5

Minor 5ss

31.3

-2.1

3.3

40.9

45.3

Minor BPS

64.5

0.44

1.3

66.1

40.2

Associated Gene:

Gene:

FAM118B

Ensembl Gene ID:

ENSAPLG00000001146

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040287

427961 - 441163

13203

ENSAPLT00000035144

423861 - 436390

12530

ENSAPLT00000001207

429593 - 441163

11571