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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_434130_436312_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
434130 - 436312
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATGCTGCCAGCT
Flanking Amino Acid:
EDGMPPAKKPRKLLPSLKTK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.7
0.71
0.7
76
26
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
34.8
-1
2.3
52.54
42.1

Associated Gene:

Gene:
FAM118B
Ensembl Gene ID:
ENSAPLG00000001146
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040287
427961 - 441163
13203
ENSAPLT00000035144
423861 - 436390
12530
ENSAPLT00000001207
429593 - 441163
11571