About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_436391_439320_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
436391 - 439320
Intron Length:
2930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTACTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
ATTTGTCTACTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
75.8
0.58
0.8
70.5
34.9
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
44.7
-0.4
2.2
61.7
39.3

Associated Gene:

Gene:
FAM118B
Ensembl Gene ID:
ENSAPLG00000001146
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001207
429593 - 441163
11571