About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4373256_4374842_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4373256 - 4374842
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
TGCTCTCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTCCTTTTCT
Flanking Amino Acid:
CSSTHDFDPTDSSSKKTKSS
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
74.4
0.55
0.9
69.1
37
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
47.7
-0.1
3.6
84.03
42.9

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000023751
4343160 - 4413370
70211
ENSAPLT00000015657
4343160 - 4568695
225536